[flang] Reimplement C1406 check as a warning

Constraint C1406 in Fortran 2018 prohibits the USE of the same module
name as both an intrinsic module and a non-intrinsic module in a scope.
The current check misinterprets the constraint as applying only to
explicitly INTRINSIC or NON_INTRINSIC module natures.

Change the check to also apply to non-explicit module natures, and
also downgrade it to a portability warning, since there is no ambiguity
and I suspect that we need to accept this usage when building f18's
own intrinsic modules.

Differential Revision: https://reviews.llvm.org/D146576