[clang][deps] Always generate module paths

Since D129389 (and downstream PR https://github.com/apple/llvm-project/pull/4965), the dependency scanner is responsible for generating full command-lines, including the modules paths. This patch removes the flag that was making this an opt-in behavior in clang-scan-deps.

Reviewed By: benlangmuir

Differential Revision: https://reviews.llvm.org/D131420