[FileCollector] add support for recording empty directories

The file collector class is useful for constructing reproducers by
creating a snapshot of the files that are accessed. Sometimes it might
also be important to construct directories that don't necessarily have files,
but are still accessed by some tool that we want to make a reproducer for.
This is useful for instance for modeling the behavior of Clang's header search,
which scans through a number of directories it doesn't actually access when
looking for framework headers. This commit extends the file collector to allow
it to work with paths that are just directories, by constructing them as the
files are copied over.

Differential Revision: https://reviews.llvm.org/D65297

llvm-svn: 367061