ThinLTO: handles modules with empty summaries

We need to add an entry in the combined-index for modules that have
a hash but otherwise empty summary, this is needed so that we can
get the hash for the module.

Also, if no entry is present in the combined index for a module, we
need to skip it when trying to compute a cache entry.

Differential Revision: https://reviews.llvm.org/D25300

llvm-svn: 283654