[clang][deps] Use top-level modules as precompiled dependencies

The `ASTReader` populates `Module::PresumedModuleMapFile` only for top-level modules, not submodules. To avoid generating empty `-fmodule-map-file=` arguments, make discovered modules depend on top-level precompiled modules. The granularity of submodules is not important here.

The documentation of `Module::PresumedModuleMapFile` says this field is non-empty only when building from preprocessed source. This means there can still be cases where the dependency scanner generates empty `-fmodule-map-file=` arguments. That's being addressed in separate patch: D108544.

Reviewed By: dexonsmith

Differential Revision: https://reviews.llvm.org/D108647