[LoopFlatten] Update MemorySSA state

I would like to move LoopFlatten from LoopPass Manager LPM2 to LPM1 (D116612),
but that is a LPM that is using MemorySSA and so LoopFlatten needs to preserve
MemorySSA and this adds that. More specifically, LoopFlatten restructures the
CFG and with this change the MSSA state is updated accordingly, where we also
update the DomTree. LoopFlatten doesn't rewrite/optimise/delete load or store
instructions, so I have not added any MSSA updates for that.

Differential Revision: https://reviews.llvm.org/D116660